README.md

In SCBIT-YYLab/DCGL: Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data

DCGL

Functions for 1) gene filtration; 2) link filtration; 3) differential co-expression analysis: DCG (Differential Coexpressed Gene) identification and DCL (Differentially Coexpressed Link) identification; and 4) differential regulation analysis: DRG (Differential Regulated Gene) identification, DRL (Differential Regulated Link) identification, DRL visualization and regulator ranking.

Reference

1. Liu BH, Yu H, Tu K, Li C, Li YX, Li YY. DCGL: an R package for identifying differentially coexpressed genes and links from gene expression microarray data. Bioinformatics 2010;26:2637–8.
2. Yang J, Yu H, Liu BH, Zhao Z, Liu L, Ma LX, et al. DCGL v2.0: an R package for unveiling differential regulation from differential co-expression. PLoS One 2013;8:e79729.
3. Yu H, Liu BH, Ye ZQ, Li C, Li YX, Li YY. Link-based quantitative methods to identify differentially coexpressed genes and gene pairs. BMC Bioinform 2011;12:315.

SCBIT-YYLab/DCGL documentation built on May 9, 2019, 3:30 a.m.