Files in SCCC-BBC/PathwaySplice
An R Package for Unbiased Splicing Pathway Analysis in RNAseq data
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/Doc4Data.R
R/Run_pathwaysplice.R
R/zzz.R
README.md
data/datalist
data/featureBasedData.RData
inst/NEWS.Rd
inst/bin/AnalysisScript.r
inst/bin/BioCheck_PathwaySplice.sh
inst/bin/Cp.r
inst/bin/Draw_PCA_4_checking.r
inst/bin/MakeExample.r
inst/bin/Make_A_Venn.r
inst/bin/Make_an_example_data_set.r
inst/bin/R_manager.r
inst/bin/R_manager.sh
inst/bin/Select_rows_of_files_randomly.sh
inst/bin/Simple.r
inst/bin/install_required_packages.r
inst/bin/processGtf.sh
inst/bin/test.r
inst/extdata/AllGeneTable.rds
inst/extdata/GTF_Files/flat.chr22.10.genes.gff
inst/extdata/SRR1660308_chr22/Counts.10.genes.txt
inst/extdata/SRR1660310_chr22/Counts.10.genes.txt
inst/extdata/SRR1660311_chr22/Counts.10.genes.txt
inst/extdata/SRR1660312_chr22/Counts.10.genes.txt
inst/extdata/SRR1660313_chr22/Counts.10.genes.txt
inst/extdata/SRR1660314_chr22/Counts.10.genes.txt
inst/extdata/SRR1660315_chr22/Counts.10.genes.txt
inst/extdata/SRR1660316_chr22/Counts.10.genes.txt
inst/extdata/SRR1660317_chr22/Counts.10.genes.txt
inst/extdata/SRR1660318_chr22/Counts.10.genes.txt
inst/extdata/SRR1660319_chr22/Counts.10.genes.txt
inst/extdata/Sample_info.txt
inst/extdata/h.all.v6.0.symbols.gmt.txt
inst/extdata/kegg.gmt.txt
man/compareResults.Rd
man/enrichmentMap.Rd
man/featureBasedData.Rd
man/gmtGene2Cat.Rd
man/lrTestBias.Rd
man/makeGeneTable.Rd
man/outKegg2Gmt.Rd
man/runPathwaySplice.Rd
tests/testthat.R
tests/testthat/test-Run_pathwaysplice.R
vignettes/Splicing-network.bib
vignettes/boxplot.png
vignettes/comparison.png
vignettes/parameterTuning.png
vignettes/res.hyper.Wall.Sampling.RData
vignettes/tutorial.Rmd
vignettes/venn.png
