tox.summary: Get the Statistical Summary for Tox Results Data

In SCCWRP/SQOUnified_archive: Tools for calculating SQO scores based on three Lines of Evidence (Benthic, Tox, Chem)

Get the Statistical Summary for Tox Results Data

Description

This function will calculate the tox summary,

given an argument which is a dataframe of tox results data

Usage

tox.summary(toxresults)

Arguments

toxresults

a dataframe with the following columns: stationid, toxbatch, species, sampletypecode matrix, labrep, result. This data must also include the control samples (stationcode 0000, sampletypecode CNEG etc) The input dataframe is structured as follows toxresults - a dataframe that contains the toxicity results stationid - an alpha-numeric identifier of the location; toxbatch - the toxbatch id - used to join with the control sample species - The Genus and species of the animale that was tested sampletypecode - The sampletype used Grab, CNEG etc. Control samples must be included matrix - Whole Sediment, Sediment Water Interface, etc. Probably useless to include. I Just have it to make sure they dont put Reference Toxicant labrep - There should be 5 per station, species pair result - the percentage that survived the test, or had normal development

Examples

data(tox_sampledata)
tox.summary(tox_sampledata)

SCCWRP/SQOUnified_archive documentation built on March 30, 2022, 12:14 a.m.