Man pages for SLINGhub/SLINGtools
Mass Spectrometry and Lipidomics Data Analysis in R
| batch_corr_center | Combines a list of MidarExperiments into one |
| calcQC | Calculate QC parameters for each feature |
| combine_experiments | Combines a list of MidarExperiments into one |
| cvlog | Coefficient of variation (CV) using log-transformed data |
| drift_corr_loess | Performs drift correction based on LOESS smoothing |
| exportWideCSV | Export any parameter to a wide-format table |
| getDatasetFilteredQC | getDatasetFilteredQC |
| get_stats | Get FC and p values from a t test contrast |
| import_MSOrganizerXLM | Imports metadata provided by an MSOrganizer EXCEL template |
| loadMasshunterCSV | loadMasshunterCSV |
| loadMSOrganizerXLM | #' load_MRMkit_csv #' #' @param data MidarExperiment object... |
| MidarExperiment | Constructor for the MidarExperiment object. |
| MidarExperiment-class | S4 Class Representing the MIDAR Dataset |
| normalizeByISTD | Normalize Intensities with corresponding ISTD Intensities |
| pipe | Pipe operator |
| plot_pca_qc | PCA plot for QC |
| plot_responsecurves | Response curves plot |
| plot_runscatter | RunScatter plot |
| quantitateByISTD | Quantitate using sample and spiked ISTD amounts |
| read_long_table_csv | Reads a long CSV file with Feature Intensities |
| read_MassHunterCSV | Read and convert an Agilent MassHunter Quant CSV result file |
| read_MassHunterCSV_wide | Reads a wide CSV file with Feature Intensities |
| read_MRMkit_raw_area_CSV | Read and convert an Agilent MassHunter Quant CSV result file |
| read_MRMkit_results | Reads a long CSV file with Feature Intensities |
| read_table_wide | Reads a wide CSV or XLSX sheet with Feature Values |
| saveQCinfo | Save the QC table to a CSV file |
| SLINGtools-package | SLINGtools: Mass Spectrometry and Lipidomics Data Analysis in... |
| volcano_plot | Get FC and p values from a t test contrast |
| writeReportXLS | Writes all a data processing report to an EXCEL file |
