get_stats: Get FC and p values from a t test contrast

In SLINGhub/SLINGtools: Mass Spectrometry and Lipidomics Data Analysis in R

Get FC and p values from a t test contrast

Description

Get FC and p values from a t test contrast

Usage

get_stats(
  data,
  feature,
  grouping,
  group_case,
  group_ref,
  paired,
  min_groupsize = 3,
  log_transform = FALSE
)

Arguments

data	data.frame or tibble
feature	feature
grouping	grouping
group_case	case group
group_ref	reference group
paired	paired data
min_groupsize	min group size for t test
log_transform	log transform before t test

Value

tibble with p values, fdr and log2FC

SLINGhub/SLINGtools documentation built on April 20, 2023, 5:09 a.m.