CRDSutils: CRDSutils Package

In SPATIAL-Lab/CRDSutils: Picarro L21X0-i Utilities

CRDSutils Package

Description

Tools for processing and managing water isotope data from Picarro CRDS instruments.

Details

In addition to package installation, you will need to set up several files and directories used by the tools. The basic structure is described below.

1. dataPath directory: A local system folder within which all coordinator data files for CRDS runs are available.

   1. The tools look for the coordinator file for a given run in the instrument directory “dataPath/instrument/”, where “instrument” is the name of the CRDS instrument, formatted as written in the coordinator data file names (e.g., “HIDS2046”).

   2. Each instrument directory must also contain a subdirectory “dataPath/instrument/runfiles” with appropriately formatted .csv files containing the sample IDs.

2. refFile: A .csv file accessible on the system that contains the IDs and known values for reference waters and values for QA parameters.

3. ioPath directory: A local system folder within which all reports will be written and read. It should contain the following subdirectories:

   1. CRDS_liquidH2O: .html and .xlsx data report files will be written to and read from this folder.

   2. Data_reports: Formatted data reports for analytical jobs will be written here into subdirectories with names matching the style argument of report.

   3. NEON_shipping: Contains NEON shipping manifest files. Processed receipt files will be output to a subdirectory named “Processed”. Only required for SIRFER lab contract work using “neon*” functions.

SPATIAL-Lab/CRDSutils documentation built on Dec. 12, 2024, 3:23 a.m.