Files in SRHilz/GliomaAtlas3D
A 3D Map of Tumor-Wide Genetic and Microenvironmental Heterogeneity Present Across Adult Diffuse Glioma
.Rbuildignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
Dockerfile
GliomaAtlas3D.Rproj
LICENSE
LICENSE.md
NAMESPACE
NEWS
R/cn_to_amp.R
R/colorByFeature.R
R/getDataValues.R
R/getDataValuesDownload.R
R/getDatasets.R
R/launchApp.R
R/loadAboutTab.R
R/loadDataTab.R
R/loadDownloadTab.R
R/plot3Dmodel.R
R/plot3dSamples.R
R/plotTemplate.R
R/shinyAppServer.R
R/shinyAppUI.R
README.md
inst/WORDLIST
inst/exdata/datasets/Patient260/sf11294/cancerprocesses.rds
inst/exdata/datasets/Patient260/sf11294/celltypes.rds
inst/exdata/datasets/Patient260/sf11294/cn.rds
inst/exdata/datasets/Patient260/sf11294/expansions.rds
inst/exdata/datasets/Patient260/sf11294/purity.rds
inst/exdata/datasets/Patient260/sf11294/rna.rds
inst/exdata/datasets/Patient276/sf11054/cn.rds
inst/exdata/datasets/Patient276/sf11054/expansions.rds
inst/exdata/datasets/Patient276/sf11054/purity.rds
inst/exdata/datasets/Patient300/sf10711/cancerprocesses.rds
inst/exdata/datasets/Patient300/sf10711/celltypes.rds
inst/exdata/datasets/Patient300/sf10711/cn.rds
inst/exdata/datasets/Patient300/sf10711/purity.rds
inst/exdata/datasets/Patient300/sf10711/rna.rds
inst/exdata/datasets/Patient303/sf10809/cancerprocesses.rds
inst/exdata/datasets/Patient303/sf10809/celltypes.rds
inst/exdata/datasets/Patient303/sf10809/cn.rds
inst/exdata/datasets/Patient303/sf10809/expansions.rds
inst/exdata/datasets/Patient303/sf10809/purity.rds
inst/exdata/datasets/Patient303/sf10809/rna.rds
inst/exdata/datasets/Patient327/sf10932/cancerprocesses.rds
inst/exdata/datasets/Patient327/sf10932/celltypes.rds
inst/exdata/datasets/Patient327/sf10932/cn.rds
inst/exdata/datasets/Patient327/sf10932/expansions.rds
inst/exdata/datasets/Patient327/sf10932/purity.rds
inst/exdata/datasets/Patient327/sf10932/rna.rds
inst/exdata/datasets/Patient340/sf11055/cancerprocesses.rds
inst/exdata/datasets/Patient340/sf11055/celltypes.rds
inst/exdata/datasets/Patient340/sf11055/cn.rds
inst/exdata/datasets/Patient340/sf11055/purity.rds
inst/exdata/datasets/Patient340/sf11055/rna.rds
inst/exdata/datasets/Patient372/sf11046/bv_hyper.rds
inst/exdata/datasets/Patient372/sf11046/cn.rds
inst/exdata/datasets/Patient372/sf11046/per_nec.rds
inst/exdata/datasets/Patient372/sf11046/purity.rds
inst/exdata/datasets/Patient373/sf11048/bv_hyper.rds
inst/exdata/datasets/Patient373/sf11048/cn.rds
inst/exdata/datasets/Patient373/sf11048/per_nec.rds
inst/exdata/datasets/Patient373/sf11048/purity.rds
inst/exdata/datasets/Patient375/sf11136/cancerprocesses.rds
inst/exdata/datasets/Patient375/sf11136/celltypes.rds
inst/exdata/datasets/Patient375/sf11136/cn.rds
inst/exdata/datasets/Patient375/sf11136/expansions.rds
inst/exdata/datasets/Patient375/sf11136/purity.rds
inst/exdata/datasets/Patient375/sf11136/rna.rds
inst/exdata/datasets/Patient413/sf11173/bv_hyper.rds
inst/exdata/datasets/Patient413/sf11173/cancerprocesses.rds
inst/exdata/datasets/Patient413/sf11173/celltypes.rds
inst/exdata/datasets/Patient413/sf11173/cn.rds
inst/exdata/datasets/Patient413/sf11173/expansions.rds
inst/exdata/datasets/Patient413/sf11173/per_nec.rds
inst/exdata/datasets/Patient413/sf11173/purity.rds
inst/exdata/datasets/Patient413/sf11173/rna.rds
inst/exdata/datasets/Patient450/sf11612/cancerprocesses.rds
inst/exdata/datasets/Patient450/sf11612/celltypes.rds
inst/exdata/datasets/Patient450/sf11612/cn.rds
inst/exdata/datasets/Patient450/sf11612/expansions.rds
inst/exdata/datasets/Patient450/sf11612/purity.rds
inst/exdata/datasets/Patient450/sf11612/rna.rds
inst/exdata/datasets/Patient452/sf11644/bv_hyper.rds
inst/exdata/datasets/Patient452/sf11644/cancerprocesses.rds
inst/exdata/datasets/Patient452/sf11644/celltypes.rds
inst/exdata/datasets/Patient452/sf11644/cn.rds
inst/exdata/datasets/Patient452/sf11644/expansions.rds
inst/exdata/datasets/Patient452/sf11644/per_nec.rds
inst/exdata/datasets/Patient452/sf11644/purity.rds
inst/exdata/datasets/Patient452/sf11644/rna.rds
inst/exdata/datasets/Patient453/sf11690/cancerprocesses.rds
inst/exdata/datasets/Patient453/sf11690/celltypes.rds
inst/exdata/datasets/Patient453/sf11690/cn.rds
inst/exdata/datasets/Patient453/sf11690/expansions.rds
inst/exdata/datasets/Patient453/sf11690/purity.rds
inst/exdata/datasets/Patient453/sf11690/rna.rds
inst/exdata/datasets/Patient454/sf11731/bv_hyper.rds
inst/exdata/datasets/Patient454/sf11731/cancerprocesses.rds
inst/exdata/datasets/Patient454/sf11731/celltypes.rds
inst/exdata/datasets/Patient454/sf11731/cn.rds
inst/exdata/datasets/Patient454/sf11731/expansions.rds
inst/exdata/datasets/Patient454/sf11731/per_nec.rds
inst/exdata/datasets/Patient454/sf11731/purity.rds
inst/exdata/datasets/Patient454/sf11731/rna.rds
inst/exdata/datasets/Patient455/sf11901/bv_hyper.rds
inst/exdata/datasets/Patient455/sf11901/cancerprocesses.rds
inst/exdata/datasets/Patient455/sf11901/celltypes.rds
inst/exdata/datasets/Patient455/sf11901/cn.rds
inst/exdata/datasets/Patient455/sf11901/geneenhancers.rds
inst/exdata/datasets/Patient455/sf11901/genepromoters.rds
inst/exdata/datasets/Patient455/sf11901/per_nec.rds
inst/exdata/datasets/Patient455/sf11901/purity.rds
inst/exdata/datasets/Patient455/sf11901/rna.rds
inst/exdata/datasets/Patient457/sf11915/bv_hyper.rds
inst/exdata/datasets/Patient457/sf11915/cancerprocesses.rds
inst/exdata/datasets/Patient457/sf11915/celltypes.rds
inst/exdata/datasets/Patient457/sf11915/cn.rds
inst/exdata/datasets/Patient457/sf11915/per_nec.rds
inst/exdata/datasets/Patient457/sf11915/purity.rds
inst/exdata/datasets/Patient457/sf11915/rna.rds
inst/exdata/datasets/Patient475/sf12180/bv_hyper.rds
inst/exdata/datasets/Patient475/sf12180/cancerprocesses.rds
inst/exdata/datasets/Patient475/sf12180/celltypes.rds
inst/exdata/datasets/Patient475/sf12180/cn.rds
inst/exdata/datasets/Patient475/sf12180/geneenhancers.rds
inst/exdata/datasets/Patient475/sf12180/genepromoters.rds
inst/exdata/datasets/Patient475/sf12180/per_nec.rds
inst/exdata/datasets/Patient475/sf12180/purity.rds
inst/exdata/datasets/Patient475/sf12180/rna.rds
inst/exdata/datasets/Patient481/sf12209/bv_hyper.rds
inst/exdata/datasets/Patient481/sf12209/cancerprocesses.rds
inst/exdata/datasets/Patient481/sf12209/celltypes.rds
inst/exdata/datasets/Patient481/sf12209/per_nec.rds
inst/exdata/datasets/Patient481/sf12209/purity.rds
inst/exdata/datasets/Patient481/sf12209/rna.rds
inst/exdata/datasets/Patient482/sf12225/bv_hyper.rds
inst/exdata/datasets/Patient482/sf12225/cancerprocesses.rds
inst/exdata/datasets/Patient482/sf12225/celltypes.rds
inst/exdata/datasets/Patient482/sf12225/cn.rds
inst/exdata/datasets/Patient482/sf12225/expansions.rds
inst/exdata/datasets/Patient482/sf12225/per_nec.rds
inst/exdata/datasets/Patient482/sf12225/purity.rds
inst/exdata/datasets/Patient482/sf12225/rna.rds
inst/exdata/datasets/Patient485/sf12300/bv_hyper.rds
inst/exdata/datasets/Patient485/sf12300/cancerprocesses.rds
inst/exdata/datasets/Patient485/sf12300/celltypes.rds
inst/exdata/datasets/Patient485/sf12300/cn.rds
inst/exdata/datasets/Patient485/sf12300/per_nec.rds
inst/exdata/datasets/Patient485/sf12300/purity.rds
inst/exdata/datasets/Patient485/sf12300/rna.rds
inst/exdata/datasets/Patient498/sf12251/geneenhancers.rds
inst/exdata/datasets/Patient498/sf12251/genepromoters.rds
inst/exdata/datasets/Patient503/sf12518/geneenhancers.rds
inst/exdata/datasets/Patient503/sf12518/genepromoters.rds
inst/exdata/metadata/sampledata_v10.rds
inst/exdata/metadata/sampledata_v11.rds
inst/exdata/metadata/sampledata_v12.rds
inst/exdata/metadata/tumordata_v10.rds
inst/exdata/metadata/tumordata_v11.rds
inst/exdata/metadata/tumordata_v12.rds
inst/exdata/models/Patient260/sf11294/adj.rds
inst/exdata/models/Patient260/sf11294/brain.rds
inst/exdata/models/Patient260/sf11294/coordinates_brain_periphery.rds
inst/exdata/models/Patient260/sf11294/coordinates_samples.rds
inst/exdata/models/Patient260/sf11294/tumor_t2.rds
inst/exdata/models/Patient276/sf11054/adj.rds
inst/exdata/models/Patient276/sf11054/brain.rds
inst/exdata/models/Patient276/sf11054/coordinates_brain_periphery.rds
inst/exdata/models/Patient276/sf11054/coordinates_samples.rds
inst/exdata/models/Patient276/sf11054/tumor_t2.rds
inst/exdata/models/Patient300/sf10711/adj.rds
inst/exdata/models/Patient300/sf10711/brain.rds
inst/exdata/models/Patient300/sf10711/coordinates_brain_periphery.rds
inst/exdata/models/Patient300/sf10711/coordinates_samples.rds
inst/exdata/models/Patient300/sf10711/tumor_t2.rds
inst/exdata/models/Patient303/sf10809/adj.rds
inst/exdata/models/Patient303/sf10809/brain.rds
inst/exdata/models/Patient303/sf10809/coordinates_brain_periphery.rds
inst/exdata/models/Patient303/sf10809/coordinates_samples.rds
inst/exdata/models/Patient303/sf10809/tumor_t2.rds
inst/exdata/models/Patient327/sf10932/adj.rds
inst/exdata/models/Patient327/sf10932/brain.rds
inst/exdata/models/Patient327/sf10932/coordinates_brain_periphery.rds
inst/exdata/models/Patient327/sf10932/coordinates_samples.rds
inst/exdata/models/Patient327/sf10932/tumor_t2.rds
inst/exdata/models/Patient340/sf11055/adj.rds
inst/exdata/models/Patient340/sf11055/brain.rds
inst/exdata/models/Patient340/sf11055/coordinates_brain_periphery.rds
inst/exdata/models/Patient340/sf11055/coordinates_samples.rds
inst/exdata/models/Patient340/sf11055/tumor_t2.rds
inst/exdata/models/Patient372/sf11046/adj.rds
inst/exdata/models/Patient372/sf11046/brain.rds
inst/exdata/models/Patient372/sf11046/coordinates_brain_periphery.rds
inst/exdata/models/Patient372/sf11046/coordinates_samples.rds
inst/exdata/models/Patient372/sf11046/tumor_t2.rds
inst/exdata/models/Patient373/sf11048/adj.rds
inst/exdata/models/Patient373/sf11048/brain.rds
inst/exdata/models/Patient373/sf11048/coordinates_brain_periphery.rds
inst/exdata/models/Patient373/sf11048/coordinates_samples.rds
inst/exdata/models/Patient373/sf11048/tumor_t2.rds
inst/exdata/models/Patient375/sf11136/adj.rds
inst/exdata/models/Patient375/sf11136/brain.rds
inst/exdata/models/Patient375/sf11136/coordinates_brain_periphery.rds
inst/exdata/models/Patient375/sf11136/coordinates_samples.rds
inst/exdata/models/Patient375/sf11136/tumor_t2.rds
inst/exdata/models/Patient413/sf11173/adj.rds
inst/exdata/models/Patient413/sf11173/brain.rds
inst/exdata/models/Patient413/sf11173/coordinates_brain_periphery.rds
inst/exdata/models/Patient413/sf11173/coordinates_samples.rds
inst/exdata/models/Patient413/sf11173/tumor_t2.rds
inst/exdata/models/Patient450/sf11612/adj.rds
inst/exdata/models/Patient450/sf11612/brain.rds
inst/exdata/models/Patient450/sf11612/coordinates_brain_periphery.rds
inst/exdata/models/Patient450/sf11612/coordinates_samples.rds
inst/exdata/models/Patient450/sf11612/tumor_t2.rds
inst/exdata/models/Patient452/sf11644/adj.rds
inst/exdata/models/Patient452/sf11644/brain.rds
inst/exdata/models/Patient452/sf11644/coordinates_brain_periphery.rds
inst/exdata/models/Patient452/sf11644/coordinates_samples.rds
inst/exdata/models/Patient452/sf11644/tumor_t2.rds
inst/exdata/models/Patient453/sf11690/adj.rds
inst/exdata/models/Patient453/sf11690/brain.rds
inst/exdata/models/Patient453/sf11690/coordinates_brain_periphery.rds
inst/exdata/models/Patient453/sf11690/coordinates_samples.rds
inst/exdata/models/Patient453/sf11690/tumor_t2.rds
inst/exdata/models/Patient454/sf11731/adj.rds
inst/exdata/models/Patient454/sf11731/brain.rds
inst/exdata/models/Patient454/sf11731/coordinates_brain_periphery.rds
inst/exdata/models/Patient454/sf11731/coordinates_samples.rds
inst/exdata/models/Patient454/sf11731/tumor_t2.rds
inst/exdata/models/Patient455/sf11901/adj.rds
inst/exdata/models/Patient455/sf11901/brain.rds
inst/exdata/models/Patient455/sf11901/coordinates_brain_periphery.rds
inst/exdata/models/Patient455/sf11901/coordinates_samples.rds
inst/exdata/models/Patient455/sf11901/tumor_t2.rds
inst/exdata/models/Patient457/sf11915/adj.rds
inst/exdata/models/Patient457/sf11915/brain.rds
inst/exdata/models/Patient457/sf11915/coordinates_brain_periphery.rds
inst/exdata/models/Patient457/sf11915/coordinates_samples.rds
inst/exdata/models/Patient457/sf11915/tumor_t2.rds
inst/exdata/models/Patient475/sf12180/adj.rds
inst/exdata/models/Patient475/sf12180/brain.rds
inst/exdata/models/Patient475/sf12180/coordinates_brain_periphery.rds
inst/exdata/models/Patient475/sf12180/coordinates_samples.rds
inst/exdata/models/Patient475/sf12180/tumor_t2.rds
inst/exdata/models/Patient481/sf12209/adj.rds
inst/exdata/models/Patient481/sf12209/brain.rds
inst/exdata/models/Patient481/sf12209/coordinates_brain_periphery.rds
inst/exdata/models/Patient481/sf12209/coordinates_samples.rds
inst/exdata/models/Patient481/sf12209/tumor_t2.rds
inst/exdata/models/Patient482/sf12225/adj.rds
inst/exdata/models/Patient482/sf12225/brain.rds
inst/exdata/models/Patient482/sf12225/coordinates_brain_periphery.rds
inst/exdata/models/Patient482/sf12225/coordinates_samples.rds
inst/exdata/models/Patient482/sf12225/tumor_t2.rds
inst/exdata/models/Patient485/sf12300/adj.rds
inst/exdata/models/Patient485/sf12300/brain.rds
inst/exdata/models/Patient485/sf12300/coordinates_brain_periphery.rds
inst/exdata/models/Patient485/sf12300/coordinates_samples.rds
inst/exdata/models/Patient485/sf12300/tumor_t2.rds
inst/exdata/models/Patient498/sf12251/adj.rds
inst/exdata/models/Patient498/sf12251/brain.rds
inst/exdata/models/Patient498/sf12251/coordinates_brain_periphery.rds
inst/exdata/models/Patient498/sf12251/coordinates_samples.rds
inst/exdata/models/Patient498/sf12251/tumor_t2.rds
inst/exdata/models/Patient503/sf12518/adj.rds
inst/exdata/models/Patient503/sf12518/brain.rds
inst/exdata/models/Patient503/sf12518/coordinates_brain_periphery.rds
inst/exdata/models/Patient503/sf12518/coordinates_samples.rds
inst/exdata/models/Patient503/sf12518/tumor_t2.rds
inst/shinyApp/app.R
inst/shinyApp/www/colorbar.png
inst/shinyApp/www/concept.png
man/cn_to_amp.Rd
man/colorByFeatureMain.Rd
man/getDataValues.Rd
man/getDataValuesDownload.Rd
man/getDatasets.Rd
man/launchApp.Rd
man/loadAboutTab.Rd
man/loadDataTab.Rd
man/loadDownloadTab.Rd
man/plot3DModel.Rd
man/plot3DSamples.Rd
man/plotTemplate.Rd
man/shinyAppServer.Rd
man/shinyAppUI.Rd
tests/plot3Dmodel.R
