getDataValues: Retrieve the values for a particular patients dataset

In SRHilz/GliomaAtlas3D: A 3D Map of Tumor-Wide Genetic and Microenvironmental Heterogeneity Present Across Adult Diffuse Glioma

Description

Creates a vector of final data values for a particular patient, tumor, and dataset

Usage

getDataValues(
  patient,
  tumor,
  dataset,
  type,
  rowSelection,
  threshold,
  conversion,
  tumorDatasetsPath
)

Arguments

patient	Patient ID in long form (i.e. Patient300 not P300)
tumor	sf number with sf lower
dataset	name of dataset (i.e. Histology, Amplification, Copy Number, etc)
type	only required if dataset is Histology
rowSelection	only required if dataset is Copy Number, RNAseq, Cell Types, Cancer-associated Processes, or Expansions
threshold	only required if dataset is Amplification
conversion	converts dataset to name of data file, where value is dataset and name is file name (ex c(cn.rds='Copy Number', ))
tumorDatasetsPath	path to datasets

SRHilz/GliomaAtlas3D documentation built on Nov. 25, 2020, 8:31 p.m.