Saber-Mohammadi/PSSMCOOL: Features Extracted from Position Specific Scoring Matrix('PSSM')

Returns almost all features that had been extracted from Position Specific Scoring Matrix so far which is a matrix of L rows (L is protein length) and 20 columns produced by 'PSI-BLAST' which is a program to produce 'PSSM' Matrix from multiple sequence alignment of proteins see <https://www.ncbi.nlm.nih.gov/books/NBK2590/> for mor details. some of these features are:'D-FPSSM-S-FPSSM' Zahiri, J., et al.(2013) <DOI:10.1016/j.ygeno.2013.05.006>.'k-separated-bigrams-PSSM' Saini, H., et al.(2016)<DOI:10.17706/jsw.11.8.756-767>. 'RPSSM' Ding, S., et al. (2014)<DOI:10.1016/j.biochi.2013.09.013>.'EDP-EEDP-MEDP' Zhang, L.Zhao, X. and Kong, L. (2014)<DOI:10.1016/j.jtbi.2014.04.008>.'smoothed-PSSM' Cheng, C.W., et al.(2008) <DOI:10.1186/1471-2105-9-S12-S6>.'DP-PSSM' Juan, E.Y., et al.(2009) <DOI:10.1109/CISIS.2009.194>.

Getting started

Package details

AuthorAlireza Mohammadi <alireza691111@gmail.com>
MaintainerAlireza mohammadi <alireza691111@gmail.com>
LicenseGPL-3
Version0.1.0
URL http://possum.erc.monash.edu/help.jsp https://github.com/Alireza9651501005/PSSMCOOL
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("Saber-Mohammadi/PSSMCOOL")
Saber-Mohammadi/PSSMCOOL documentation built on Dec. 18, 2021, 12:01 p.m.