FPSSM: D-FPSSM and SF-PSSM feature vectors
In Saber-Mohammadi/PSSMCOOL: Features Extracted from Position Specific Scoring Matrix('PSSM')
Description
Usage
Arguments
Value
References
Examples
Description
This function produces list of two feature vectors named D-FPSSM and S-FPSSM
which then used by FPSSM2 function to construct feature vector of length 100 for each pair of
proteins which then used for protein-protein interaction prediction in each dataset.
Usage
1
FPSSM(pssm_name)
Arguments
pssm_name
name of PSSM Matrix file
Value
two feature vectors of different length which is used in later steps.
References
Zahiri, J., et al. (2013) PPIevo: protein-protein interaction prediction from PSSM based
evolutionary information, Genomics, 102, 237-242.
Examples
1
q<-FPSSM(system.file("extdata","C7GQS7.txt.pssm",package="PSSMCOOL"))
Saber-Mohammadi/PSSMCOOL documentation built on Dec. 18, 2021, 12:01 p.m.
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Description Usage Arguments Value References Examples
Description
This function produces list of two feature vectors named D-FPSSM and S-FPSSM which then used by FPSSM2 function to construct feature vector of length 100 for each pair of proteins which then used for protein-protein interaction prediction in each dataset.
Usage
1 | FPSSM(pssm_name)
|
Arguments
pssm_name |
name of PSSM Matrix file |
Value
two feature vectors of different length which is used in later steps.
References
Zahiri, J., et al. (2013) PPIevo: protein-protein interaction prediction from PSSM based evolutionary information, Genomics, 102, 237-242.
Examples
1 | q<-FPSSM(system.file("extdata","C7GQS7.txt.pssm",package="PSSMCOOL"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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