API for Sage-Bionetworks/AMPAD
| Global functions | |
|---|---|
| aggregate_module_summary_plots | Source code |
| bootstrapFrequencies | Source code |
| buildAggregateModules | Source code |
| buildAggregateNonADModules | Source code |
| buildModuleGraph | Source code |
| buildTargetedModules | Source code |
| build_enrichment_summary_table | Source code |
| collateEnrichmentSets | Source code |
| collatePathways | Source code |
| compareADtoNonADmods | Source code |
| computePairwiseMatrixOfEnrichments | Source code |
| compute_median_expression | Source code |
| convertEnsemblToHgnc | Source code |
| convertHgncToEnsembl | Source code |
| export_team_info | Source code |
| fisherWrapper | Source code |
| fisherWrapperOR | Source code |
| fisherWrapperPval | Source code |
| getAdGenetics | Source code |
| getAdGenetics2 | Source code |
| getCellTypes | Source code |
| getCuratedPathways | Source code |
| getDataForModulePainting | Source code |
| getDeg | Source code |
| getModuleMetainfo | Source code |
| get_demographics | Source code |
| hello | Man page |
| improvedAdRelevancePlot | Source code |
| listify | Source code |
| listifyWrapper | Source code |
| makeAggregate | Source code |
| makeDEGAD | Source code |
| makeEnrichmentPCAplot | Source code |
| makePcStatistics | Source code |
| make_dot_plot | Source code |
| meta_analysis_summary_table | Source code |
| outerSapply | Source code |
| outerSapplyParallel | Source code |
| pairwiseMatrixOfEnrichments | Source code |
| pullADgenes | Source code |
| pullExpressionAndPhenoWinsorized | Source code |
| pullFullManifests | Source code |
| pullReferenceGeneSets | Source code |
| pull_all_results | Source code |
| qqplotFigure | Source code |
| removeSwappedDupKeyValueDf | Source code |
| run_amp_ad_enrichment | Source code |
| run_amp_ad_enrichment2 | Source code |
| run_amp_ad_enrichment2_lists | Source code |
| run_ewce | Source code |
| run_full_deg_eigenanalysis | Source code |
| run_full_enrichment_suite | Source code |
| run_magma_analysis | Source code |
| splitByBrainRegionAdjustPvalue | Source code |
| summarizeModulesNew | Source code |
| trem2_alt_splicing | Source code |
