Files in Sage-Bionetworks/AMPAD

.Rbuildignore

.gitignore

AMPAD.Rproj

DESCRIPTION

NAMESPACE

R/aggregate_module_summary_plots.R R/bootstrapFrequencies.R R/buildAggregateModules.R R/buildAggregateNonADModules.R R/buildModuleGraph.R R/buildTargetedModules.R R/build_enrichment_summary_table.R R/collateEnrichmentSets.R R/collatePathways.R R/compareADtoNonADmods.R R/computePairwiseMatrixOfEnrichments.R R/compute_median_expression.R R/convertEnsemblToHgnc.R R/convertHgncToEnsembl.R R/cowplot_rotated.R R/export_team_info.R R/fisherWrapper.R R/fisherWrapperOR.R R/fisherWrapperPval.R R/getAdGenetics.R R/getAdGenetics2.R R/getCellTypes.R R/getCuratedPathways.R R/getDataForModulePainting.R R/getDeg.R R/getModuleMetainfo.R R/get_demographics.R R/improvedAdRelevancePlot.R R/listify.R R/listifyWrapper.R R/makeAggregate.R R/makeDEGAD.R R/makeEnrichmentPCAplot.R R/makePcStatistics.R R/make_dot_plot.R R/meta_analysis_summary_table.R R/outerSapply.R R/outerSapplyParallel.R R/pairwiseMatrixOfEnrichments.R R/pullADgenes.R R/pullExpressionAndPhenoWinsorized.R R/pullFullManifests.R R/pullReferenceGeneSets.R R/qqplotFigure.R R/removeSwappedDupKeyValueDf.R R/run_amp_ad_enrichment.R R/run_amp_ad_enrichment2.R R/run_amp_ad_enrichment2_lists.R R/run_ewce.R R/run_full_deg_eigenanalysis.R R/run_full_enrichment_suite.R R/run_magma_analysis.R R/splitByBrainRegionAdjustPvalue.R R/summarizeModulesNew.R R/trem2_alt_splicing.R README.md

archive/.gitignore

archive/buildSummaryManifest.R archive/build_meta_modules.R archive/code_for_cory.R archive/cross_study_sample_viz.Rmd archive/deg_things.R archive/ewce_analysis.R archive/isChangedInADBrain.r archive/m109enrichment.R archive/manuscript_analyses.Rmd archive/manuscript_analyses_deprecated.Rmd archive/moduleCategoryPlot.R archive/show_comparsion_of_modules.R archive/target_enrichment.R archive/upsettest.R man/hello.Rd manuscript.Rmd

Sage-Bionetworks/AMPAD documentation built on Jan. 13, 2020, 9:18 p.m.