Description Usage Arguments Value Author(s)
Loads data for gene expression, copy number, clinical covariates and clinical survival times for the test dataset used to evlauate model scores.
1 | loadMetabricTestData(loadSurvData = FALSE)
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loadSurvData |
specifies if survival data is loaded. Should be set to false to users who do not have access to validation data. Set to true for automated model evaluation harness. |
a list with elements: exprData, containing an ExpressionSet of gene expression features; copyData, containing an ExpressionSet of copy number features; clinicalFeaturesData, containing an AnnotatedDataFrame of clinical covariates; and clinicalSurvData, if loadSurvData=TRUE, containing a Surv object of survival times and censor values.
Adam Margolin, Erhan Bilal
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