Man pages for Sage-Bionetworks/dccvalidator
Metadata Validation for Data Coordinating Centers
| add_dictionary_sheets | Add Dictionary Sheets |
| app_server | App server |
| app_ui | App UI |
| attempt_login | Attempt to log into Synapse |
| can_coerce | Check coercibility |
| check_ages_over_90 | Check for ages over 90 |
| check_all | Run all validation checks |
| check_annotation_keys | Check annotation keys |
| check_annotation_values | Check annotation values |
| check_certified_user | Check if user is certified |
| check_col_names | Check column names against their corresponding template |
| check_cols_complete | Check for complete columns |
| check_cols_empty | Check for empty columns |
| check_complete_ids | Check data against existing IDs |
| check_condition | Create a condition of the given type |
| check_duplicate_paths | Check for duplicated file paths |
| check_files_manifest | Check that files are present in manifest |
| check_ids_match | Check ids |
| check_indiv_ids_dup | Check uniqueness of individual and specimen IDs |
| check_invalid_characters | Check for non-ascii characters |
| check_keys | Check that a given set of keys are all present in an... |
| check_parent_syn | Check synID of parent in manifest |
| check_pass | Create custom conditions for reporting |
| check_schema_df | Check a data frame of data against a JSON Schema |
| check_schema_json | Check data against a JSON Schema |
| check_team_membership | Check team membership |
| check_values | Check a set of keys and their values |
| dccvalidator-package | dccvalidator: Metadata Validation for Data Coordinating... |
| df_to_json_list | Convert data frame to JSON |
| dot-onLoad | Set up Synapse and OAuth variables |
| file_summary | UI for the file summary module |
| gather_template_ids | Gather all template ids |
| get_file_schema | Get JSON schema attributes from a file |
| get_metadataType_indices | Get metadataType indices |
| get_synapse_annotations | Get Synapse annotations |
| get_synapse_schema | Get Synapse validation schema |
| get_synapse_table | Get Synapse table |
| get_template | Get metadata template keys |
| get_template_keys_schema | Get JSON schema template |
| get_template_keys_synID | Get excel or csv template |
| get_template_synIDs | Get Template synIDs |
| has_auth_code | Has authorization code |
| logged_in | Check if logged in as user |
| mod_main_ui | Main dccvalidator UI |
| mod_synapse_oauth_ui | Synapse Oauth Module |
| oauth_process | Do the OAuth process |
| report_unsatisfied_requirements | Create a modal dialog if user is not in required team(s) or... |
| results_boxes | UI function for results boxes module |
| run_app | Run the Shiny application |
| set_staging_endpoints | Set Synapse Staging Endpoints |
| setup_global_oauth_vars | Sets up global OAuth variables |
| show_modal | Wrapper for modals |
| update_template_dictionaries | Update Template Dictionaries |
| valid_annotation_keys | Valid annotation keys |
| valid_annotation_values | Valid annotation values |
| verify_dictionary_structure | Verify Dictionary Structure |
| with_busy_indicator_ui | Show busy indicator |
