Files in Sage-Bionetworks/dccvalidator

Metadata Validation for Data Coordinating Centers

.Rbuildignore

.Rprofile

.github/CODE_OF_CONDUCT.md .github/CONTRIBUTING.md .github/PULL_REQUEST_TEMPLATE.md

.github/workflows/R-CMD-check.yaml

.github/workflows/lint.yaml

.github/workflows/pkgdown.yaml

.gitignore

.lintr

.pre-commit-config.yaml

DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

NEWS.md R/app-config.R R/app-reporting.R R/app-server.R R/app-ui.R R/check-ages-over-90.R R/check-all.R R/check-annotation-keys.R R/check-annotation-values.R R/check-certified-user.R R/check-col-names.R R/check-cols-complete.R R/check-cols-empty.R R/check-complete-ids.R R/check-duplicate-paths.R R/check-files-manifest.R R/check-ids-duplicate.R R/check-ids-match.R R/check-invalid-characters.R R/check-name.R R/check-parent-syn.R R/check-schema-df.R R/check-schema-json.R R/check-team-membership.R R/conditions.R R/create-folder.R R/create-footer.R R/dccvalidator-package.R R/df-helpers.R R/df-to-json.R R/get-synapse-annotations.R R/get-template.R R/get-user-teams.R R/instructions.R R/metadata-template-dictionary.R R/mod-app-instructions.R R/mod-button-indicator.R R/mod-file-summary.R R/mod-get-study-names.R R/mod-main.R R/mod-results-boxes.R R/mod-synapse-oauth.R R/mod-upload-documentation.R R/mod-validator.R R/modals.R R/python-helpers.R R/run-app.R R/shiny-helpers.R R/synapse-helpers.R R/utils.R README.Rmd README.md

_pkgdown.yml

app.R

codecov.yml

cran-comments.md

dccvalidator.Rproj

inst/app/.Rprofile

inst/app/create_project.R

inst/app/www/custom.css

inst/config.yml

inst/extdata/test_assay.csv

inst/extdata/test_biospecimen.csv

inst/extdata/test_individual.csv

inst/extdata/test_manifest.txt

inst/scripts/README.md inst/scripts/update-metadata-template-dictionaries.R inst/study-documentation-amp-ad.Rmd inst/study-documentation-pec.Rmd

inst/testdata/amp.ad.data.Assay16SrRNAseqMetadataTemplate.schema.json

inst/using-the-dccvalidator-1kD.Rmd inst/using-the-dccvalidator-app-amp-ad.Rmd inst/using-the-dccvalidator-pec.Rmd inst/using-the-dccvalidator-veoibd.Rmd man/add_dictionary_sheets.Rd man/app_server.Rd man/app_ui.Rd man/attempt_login.Rd man/can_coerce.Rd man/check_ages_over_90.Rd man/check_all.Rd man/check_annotation_keys.Rd man/check_annotation_values.Rd man/check_certified_user.Rd man/check_col_names.Rd man/check_cols_complete.Rd man/check_cols_empty.Rd man/check_complete_ids.Rd man/check_condition.Rd man/check_duplicate_paths.Rd man/check_files_manifest.Rd man/check_ids_match.Rd man/check_indiv_ids_dup.Rd man/check_invalid_characters.Rd man/check_keys.Rd man/check_parent_syn.Rd man/check_pass.Rd man/check_schema_df.Rd man/check_schema_json.Rd man/check_team_membership.Rd man/check_values.Rd man/dccvalidator-package.Rd man/df_to_json_list.Rd man/dot-onLoad.Rd man/file_summary.Rd man/gather_template_ids.Rd man/get_file_schema.Rd man/get_metadataType_indices.Rd man/get_synapse_annotations.Rd man/get_synapse_schema.Rd man/get_synapse_table.Rd man/get_template.Rd man/get_template_keys_schema.Rd man/get_template_keys_synID.Rd man/get_template_synIDs.Rd man/has_auth_code.Rd man/logged_in.Rd man/mod_main_ui.Rd man/mod_synapse_oauth_ui.Rd man/oauth_process.Rd man/report_unsatisfied_requirements.Rd man/results_boxes.Rd man/run_app.Rd man/set_staging_endpoints.Rd man/setup_global_oauth_vars.Rd man/show_modal.Rd man/update_template_dictionaries.Rd man/valid_annotation_keys.Rd man/valid_annotation_values.Rd man/verify_dictionary_structure.Rd man/with_busy_indicator_ui.Rd

renv.lock

renv/.gitignore

renv/activate.R

renv/settings.dcf

requirements.txt

tests/testthat.R tests/testthat/test-app-reporting.R tests/testthat/test-check-ages-over-90.R tests/testthat/test-check-all.R tests/testthat/test-check-annotation-keys.R tests/testthat/test-check-annotation-values.R tests/testthat/test-check-certified-user.R tests/testthat/test-check-col-names.R tests/testthat/test-check-cols-complete.R tests/testthat/test-check-cols-empty.R tests/testthat/test-check-complete-ids.R tests/testthat/test-check-duplicate-paths.R tests/testthat/test-check-files-manifest.R tests/testthat/test-check-ids-dup.R tests/testthat/test-check-ids-match.R tests/testthat/test-check-invalid-characters.R tests/testthat/test-check-parent-syn.R tests/testthat/test-check-schema-df.R tests/testthat/test-check-schema-json.R tests/testthat/test-check-team-membership.R tests/testthat/test-conditions.R tests/testthat/test-create-folder.R tests/testthat/test-create-footer.R tests/testthat/test-df-helpers.R tests/testthat/test-df-to-json.R tests/testthat/test-get-synapse-annotations.R tests/testthat/test-get-template.R tests/testthat/test-get-user-teams.R tests/testthat/test-instructions.R tests/testthat/test-is-name-valid.R tests/testthat/test-metadata-template-dictionary.R tests/testthat/test-mod-file-summary-helpers.R tests/testthat/test-python-helpers.R tests/testthat/test-utils.R

vignettes/.gitignore

vignettes/customizing-dccvalidator.Rmd vignettes/deploying-dccvalidator.Rmd vignettes/study-documentation-amp-ad.Rmd vignettes/study-documentation-pec.Rmd vignettes/using-the-dccvalidator-app-amp-ad.Rmd vignettes/using-the-dccvalidator-pec.Rmd

Sage-Bionetworks/dccvalidator documentation built on May 7, 2022, 10:32 a.m.