loadFederationMetabricTestData1: Load test data for the metabric re-evaluation with METABRIC 1

Description Usage Arguments Value Author(s)

Description

Loads data for gene expression, copy number, clinical covariates and clinical survival times for the test dataset used to evlauate model scores.

Usage

1

Arguments

loadSurvData

specifies if survival data is loaded. Should be set to false to users who do not have access to validation data. Set to true for automated model evaluation harness.

Value

a list with elements: exprData, containing an ExpressionSet of gene expression features; copyData, containing an ExpressionSet of copy number features; clinicalFeaturesData, containing an AnnotatedDataFrame of clinical covariates; and clinicalSurvData, if loadSurvData=TRUE, containing a Surv object of survival times and censor values.

Author(s)

Adam Margolin and In Sock Jang


Sage-Bionetworks/federationPLoSRevision documentation built on May 9, 2019, 12:12 p.m.