Files in Sage-Bionetworks/magora
Mouse-Agora
.Rbuildignore
.Rprofile
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/app_config.R
R/app_server.R
R/app_ui.R
R/complete_gene_expression_heatmap_data.R
R/construct_bookmark.R
R/data.R
R/expand_mouse_model_factor_from_selection.R
R/magora_boxplot.R
R/magora_corrplot.R
R/magora_heatmap.R
R/magora_volcano_plot.R
R/mod_available_models.R
R/mod_details_modal.R
R/mod_download.R
R/mod_gene_expression_heatmap.R
R/mod_gene_expression_volcano.R
R/mod_header.R
R/mod_nanostring.R
R/mod_pathology.R
R/mod_start.R
R/mouseagora-package.R
R/regenerate_pvalue.R
R/run_app.R
R/utils-pipe.R
README.Rmd
README.md
app.R
data-raw/available_models.R
data-raw/available_models/available_models.csv
data-raw/check_latest_version.R
data-raw/gene_expressions.R
data-raw/gene_expressions/data_sources.csv
data-raw/nanostring.R
data-raw/pathology.R
data-raw/pathology/3xTg-AD/3xTg-AD_data_sources.csv
data-raw/pathology/5xFAD/5xfad_data_sources.csv
data-raw/pathology/Abca7-V1599M/Abca7-V1599M_data_sources.csv
data-raw/pathology/Trem2-R47H_NSS/Trem2-R47H_NSS_data_sources.csv
data/available_models.rda
data/gene_expressions.rda
data/gene_expressions_labels.rda
data/gene_expressions_tissue.rda
data/nanostring.rda
data/nanostring_for_plot.rda
data/pathology.rda
data/pathology_mouse_models.rda
data/pathology_tissue.rda
inst/app/www/.gitkeep
inst/app/www/AgoraBanner.svg
inst/app/www/content/gene_expression_all/content.md
inst/app/www/content/gene_expression_all/details.md
inst/app/www/content/gene_expression_selected/content.md
inst/app/www/content/gene_expression_selected/details.md
inst/app/www/content/nanostring/content.md
inst/app/www/content/nanostring/details.md
inst/app/www/content/pathology/content.md
inst/app/www/content/pathology/details.md
inst/app/www/content/start/content.md
inst/app/www/content/start/header.md
inst/app/www/content/start/title.md
inst/app/www/favicon.ico
inst/app/www/full_logo.svg
inst/app/www/style.css
inst/golem-config.yml
man/available_models.Rd
man/expand_mouse_model_factor_from_selection.Rd
man/gene_expressions.Rd
man/gene_expressions_labels.Rd
man/gene_expressions_tissue.Rd
man/magora_boxplot.Rd
man/magora_corrplot.Rd
man/magora_heatmap.Rd
man/magora_volcano_plot.Rd
man/mod_header_ui.Rd
man/mod_start_ui.Rd
man/nanostring.Rd
man/nanostring_for_plot.Rd
man/pathology.Rd
man/pathology_mouse_models.Rd
man/pathology_tissue.Rd
man/pipe.Rd
man/regenerate_pvalue.Rd
man/run_app.Rd
mouseagora.Rproj
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
tests/figs/deps.txt
tests/figs/magora-boxplot/boxplot-female-only.svg
tests/figs/magora-boxplot/boxplot-male-only.svg
tests/figs/magora-boxplot/faceted-box-plots.svg
tests/figs/magora-boxplot/gene-expression-all-mouse-line.svg
tests/figs/magora-boxplot/gene-expression-different-order.svg
tests/figs/magora-boxplot/gene-expression-no-data.svg
tests/figs/magora-boxplot/gene-expression-single-mouse-line.svg
tests/figs/magora-boxplot/no-data-both.svg
tests/figs/magora-boxplot/no-data-control.svg
tests/figs/magora-boxplot/no-data-experiment.svg
tests/figs/magora-boxplot/no-data-interaction.svg
tests/figs/magora-boxplot/not-all-ages-gene-expressions.svg
tests/figs/magora-boxplot/not-all-ages.svg
tests/figs/magora-boxplot/pathology-all-zeros.svg
tests/figs/magora-boxplot/pathology-different-order.svg
tests/figs/magora-boxplot/pathology-panel-no-data-matches-panel-with-data.svg
tests/figs/magora-boxplot/pathology-y-axes-scaled-by-model-facet-inherit-from-plot-if-missing-data.svg
tests/figs/magora-boxplot/pathology-y-axes-scaled-by-model-facet-inherit-from-row-if-missing-data.svg
tests/figs/magora-boxplot/pathology-y-axes-scaled-by-model.svg
tests/figs/magora-boxplot/two-row-facets-four.svg
tests/figs/magora-boxplot/two-row-facets-three.svg
tests/figs/magora-boxplot/two-row-facets.svg
tests/testthat.R
tests/testthat/test-expand_mouse_model_factor.R
tests/testthat/test-magora_boxplot.R
tests/testthat/test-magora_volcano_plot.R
tests/testthat/test-mod_download.R
