inst/app/www/content/gene_expression_all/details.md
In Sage-Bionetworks/magora: Mouse-Agora
All Model AD RNAseq is carried out using standardized protocols. Note that the two centers use slightly different protocols. UCI performs RNAseq on both hippocampus and cortex, while IU/Jax/Pitt performs RNAseq on hemibrains.
Log2 fold change has been computed for each model x sex x age combination in comparison to predefined controls, as follows:
- 5xFAD vs C57BL/6J
- 3xTg-AD vs B6129
- Trem2 vs C57BL/6J
- APOE4/Trem2 vs C57BL/6J
- APOE4 vs C57BL/6J
- hABKI vs C57BL/6J
Both UCI and IU/Jax/Pitt centers have characterized the 5xFAD model; other mouse models were characterized by only one of the two centers.
View sequencing data in the AD Knowledge Portal
Sage-Bionetworks/magora documentation built on July 17, 2022, 7:56 a.m.
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All Model AD RNAseq is carried out using standardized protocols. Note that the two centers use slightly different protocols. UCI performs RNAseq on both hippocampus and cortex, while IU/Jax/Pitt performs RNAseq on hemibrains.
Log2 fold change has been computed for each model x sex x age combination in comparison to predefined controls, as follows:
- 5xFAD vs C57BL/6J
- 3xTg-AD vs B6129
- Trem2 vs C57BL/6J
- APOE4/Trem2 vs C57BL/6J
- APOE4 vs C57BL/6J
- hABKI vs C57BL/6J
Both UCI and IU/Jax/Pitt centers have characterized the 5xFAD model; other mouse models were characterized by only one of the two centers.
View sequencing data in the AD Knowledge Portal
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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