get_annotation_batch: Process Synapse Table Column Files

In Sage-Bionetworks/mhealthannotator: mhealthtannotator

Description

Process Synapse Table Filehandles in batch processing, will take unannotated data and batch process each of them based on a visualization function

Usage

get_annotation_batch(
  syn,
  all_data,
  curated_data,
  synapse_tbl_id,
  filehandle_cols,
  uid,
  survey_colnames,
  n_batch,
  output_location,
  visualization_funs,
  cache_location,
  keep_metadata = NULL,
  sort_keys = NULL
)

Arguments

syn	synapseclient
all_data	dataframe of whole data from synapse table
curated_data	dataframe of annotated ata
synapse_tbl_id	synapse source table id
filehandle_cols	filehandle column target to parse
uid	unique identifier of each files
survey_colnames	the column for storing survey input
n_batch	number of batch per session
output_location	where to store processed files
visualization_funs	function to visualize data
cache_location	where to find raw files
keep_metadata	metadata to keep from the table
sort_keys	sorting keys

Value

a dataframe containing processed Table column files that will be used for rendering in the Shiny App

Sage-Bionetworks/mhealthannotator documentation built on Jan. 28, 2022, 6:08 a.m.