Man pages for Sage-Bionetworks/predictiveModeling
The predictive modeling package allows users to write custom predictive models or use off-the-shelf models via caret, and compare their performance.
| CaretModel | CaretModel |
| convertDataFrameToFeatureMatrix | convertDataFrameToFeatureMatrix |
| CoxModel | CoxModel |
| createAggregateFeatureDataSet | createAggregateFeatureDataSet |
| createENetTuneGrid | createENetTuneGrid |
| createFeatureAndResponseDataList | createFeatureAndResponseDataList |
| crossValidatePredictiveModel | Perform cross validation on a preditive model, this method... |
| crossValidatePredictiveSurvivalModel | Perform cross validation on a preditive model, this model... |
| defaultTrainControl | Create a default trControl object for use with caret |
| exactConcordanceIndex | Compute the exact value of concordance index |
| filterNasFromMatrix | removes rows and or columns from a matrix that contain NA... |
| filterPredictiveModelData | filterPredictiveModelData filters |
| GlmnetModel | GlmnetModel |
| LinearModel | LinearModel |
| MostCorrelatedFeatures | MostCorrelatedFeatures |
| plotPredictiveModelHeatmap | Plot a heatmap displaying predictive features selected by a... |
| PredictiveModel | PredictiveModel |
| PredictiveModelFeatureEvaluator | PredictiveModelFeatureEvaluator |
| PredictiveModelPerformance | PredictiveModelPerformance |
| PredictiveModelResults | PredictiveModelResults |
| RSFmodel | RSFmodel |
| SurvivalModelPerformance | SurvivalModelPerformance |
| SurvivalModelPerformanceCV | SurvivalModelPerformanceCV |
| trainPartition | Perform one iteration of model training on a portion of the... |
