Files in Sage-Bionetworks/rSCR
R functions for contributing to the Synapse Commons Repository
.project
DESCRIPTION
NAMESPACE
R/AllGenericMethods.R
R/contribute.R
R/contributeData.R
R/crawlArrayExpress.R
R/crawlNcbiGeo.R
R/crawlTcga.R
R/createData.R
R/createStudy.R
R/downloadExternalFile.R
R/downloadPrivateTcgaFiles.R
R/errorHandling.R
R/findNewDataToProcess.R
R/getTcgaEntitiesToProcess.R
R/handleContribution.R
R/handleLocation.R
R/handleProject.R
R/handleTcgaClinical.R
R/ontology.R
R/processSerialIndex.R
R/splitAttributesAndProperties.R
R/test_rSCR_package.R
R/tryCatch.W.E.R
R/updateSCRWithArrayExpressCrawlerOutput.R
R/updateSCRWithGeoCrawlerOutput.R
R/updateSCRWithTcgaCrawlerOutput.R
R/zzz.R
README.md
inst/Perl/getGSEs.pl
inst/doc/geo.Rnw
inst/doc/scr.Rnw
inst/doc/tcga.Rnw
inst/extdata/arrayExpressPlatforms.txt
inst/extdata/ncbiGPLIDs.txt
inst/extdata/tcgaAnnotations.txt
inst/extdata/testData/arrayExpress.Rda
inst/extdata/testData/arrayExpressJSON.Rda
inst/extdata/testData/arrayExpressURLs.Rda
inst/extdata/testData/contributionPostLocation.Rda
inst/extdata/testData/contributionToLayer.Rda
inst/extdata/testData/egLayer.Rda
inst/extdata/testData/egProject.Rda
inst/extdata/testData/egStudy.Rda
inst/extdata/testData/parsedArrayExpressJSON.Rda
inst/extdata/testData/parsedUrl.Rda
inst/extdata/testData/qryResult.Rda
inst/extdata/testData/qryResultDataset.Rda
inst/extdata/testData/qryResultLayer.Rda
inst/unitTests/test_contribute.R
inst/unitTests/test_contributeData.R
inst/unitTests/test_crawlArrayExpress.R
inst/unitTests/test_crawlTcga.R
inst/unitTests/test_createLayer.R
inst/unitTests/test_createStudy.R
inst/unitTests/test_handleContribution.R
inst/unitTests/test_handleLocation.R
inst/unitTests/test_splitAttributesAndProperties.R
man/contributeData.Rd
man/crawlArrayExpress.Rd
man/crawlNcbiGeo.Rd
man/crawlTcga.Rd
man/rSCR-package.Rd
man/updateScrWithTcgaCrawlerOutput.Rd
tests/runUnitTestSuite.R
