write.bayestraits: Writing BayesTraits files

In SamPassmore/excdr: Useful functions for members of excd (and beyond)

Description

Given a data.frame and either a single object of class phylo or a list of class phylo objects, this function will subset the data on specified variables and prune the trees to match that data (optionally removing NA values) and write the data into a format suitable for use with BayesTraits.

Usage

write.bayestraits(tree, data, variables, dir = "./", na.omit = FALSE,
  filename)

Arguments

tree	an object of class phylo or list of phylo objects
data	a data.frame
variables	a character string or character vector of the names of columns to subset to, alternatively you can use the numeric values to indicate the column
dir	the directory to save the output files to. Defaults to current directory
na.omit	a TRUE/FALSE argument to specify whether NA values should be removed from your final data file
optional:	used to name the output file. Will use variable names by default.

Value

two files will be saved to the specified directory *.bttrees holding the pruned tree files and *.btdata holding the subset and formatted data.

SamPassmore/excdr documentation built on May 23, 2019, 10:36 p.m.