In SamanthaRoseCoy/task09: Package that adds a header to a .gff smrtanalysis output

Introduction

This package takes the output file (.gff) from the smrtanalysis command-line pipeline. This has been manually subjected to the modification and motif algorithms, generating a genome map for modificiation sites, as well as associated methylation motifs. The package adds an informative header to the .gff file for dowstream processing.

Package Remote

A remote repository for this package can be found on GitHub. https://github.com/SamanthaRoseCoy/task_09.git

Uses

Suppose you want to parse data in the attributes file to pool your analysis by motif and non-motif associated modifications. It would be easier to associate the columns of interest with actual names. To do this you would use:

library(AttributesModifier)

AttributesModifier("Test_Data.gff")

SamanthaRoseCoy/task09 documentation built on May 8, 2019, 8:33 a.m.