This package has been developed to conveniently executes the retain-resolve agglomeration algorithm described in the manuscript: Mapping microbiota to clinical anxiety (Chin Fatt et al, 2022). The retain resolve algorithm requires ASV-level 16S count data stored as a phyloseq object. Users input parameters for the agglomeration and filtering thresholds. The main output is a phyloseq object containing a mix of retained ASV-level and resolved genus-level taxa and their counts.
Package details |
|
---|---|
Author | Sarah Asbury |
Maintainer | The package maintainer <asburys@mcmaster.ca> |
License | AGPL-3 |
Version | 0.1.0 |
Package repository | View on GitHub |
Installation |
Install the latest version of this package by entering the following in R:
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.