physeq.convert.rel: Convert counts to relative abundance.
In SarahAsbury/retainresolve: Retain Resolve Microbiome Agglomeration
physeq.convert.rel R Documentation
Convert counts to relative abundance.
Description
Converts taxa counts stored in phyloseq object into taxa relative abundance
Usage
physeq.convert.rel(physeq, warning.in = TRUE)
Arguments
physeq
input phyloseq object
warning.in
TRUE or FALSE. If total relative abundance for a sample does not equal 1, should an error be issued?
Value
Returns both a phyloseq object and the OTU table as a dataframe where counts are replaced by relative abundance.
SarahAsbury/retainresolve documentation built on Feb. 20, 2023, 7:48 a.m.
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| physeq.convert.rel | R Documentation |
Convert counts to relative abundance.
Description
Converts taxa counts stored in phyloseq object into taxa relative abundance
Usage
physeq.convert.rel(physeq, warning.in = TRUE)
Arguments
physeq |
input phyloseq object |
warning.in |
|
Value
Returns both a phyloseq object and the OTU table as a dataframe where counts are replaced by relative abundance.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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