make_hexbin_label: Group label plot position.

In SaskiaFreytag/schex: Hexbin plots for single cell omics data

Group label plot position.

Description

Group label plot position.

Usage

make_hexbin_label(sce, col)

Arguments

sce	A SingleCellExperiment object.
col	The name referring to one column in meta data for which the label position on the plot is calculated for every level. The chosen column needs to be a factor.

Value

A dataframe.

Examples

# For SingleCellExperiment object
library(TENxPBMCData)
library(scater)
tenx_pbmc3k <- TENxPBMCData(dataset = "pbmc3k")
rm_ind <- calculateAverage(tenx_pbmc3k) < 0.1
tenx_pbmc3k <- tenx_pbmc3k[!rm_ind, ]
tenx_pbmc3k <- logNormCounts(tenx_pbmc3k)
tenx_pbmc3k <- runPCA(tenx_pbmc3k)
tenx_pbmc3k <- make_hexbin(tenx_pbmc3k, 80, dimension_reduction = "PCA")
tenx_pbmc3k$random <- factor(sample(1:3, ncol(tenx_pbmc3k), replace = TRUE))
make_hexbin_label(tenx_pbmc3k, col = "random")

SaskiaFreytag/schex documentation built on Feb. 4, 2024, 7:49 p.m.