jami: Wrapper function for calling JAMI from R

In SchulzLab/RJAMI: This is a wrapper package for JAMI

Description

Wrapper function for calling JAMI from R

Usage

jami(gene_miRNA_interactions, gene_expr, mir_expr, output_file = NULL)

Arguments

gene_miRNA_interactions	either a path, a data frame, or a list of interacions to consider
gene_expr	either a path, a data frame, a matrix or ExpressionSet for gene expression data
mir_expr	either a path, a data frame, a matrix or ExpressionSet for miRNA expression data
output_file	optional output filename for JAMI results

Value

the JAMI result as a list of two data frames. result lists all triplets, aggregated pools p-values by Fisher's method for each gene

SchulzLab/RJAMI documentation built on May 7, 2019, 10:51 p.m.