README.md

In ScitoVation/ClearanceTool: What the Package Does (Title Case,

ClearanceTool User Guide.

A step by step user guide for the current version of Clearance Tool can be found under inst/docs folder in the repo above.

ClearanceTool INSTALLATION

Installing R.

Installing Clearance_Tool requires the latest version of 64 bit R-3.5 or higher(link), RStudio(link), and Rtools(link). While installing Rtools make sure the box that says "Add Rtools to System Path" is checked.

Installing the package

Open Rstudio once all of the above are installed. On the Rstudio console type the following command

install.packages("devtools",dependencies = T)

This will install the package "devtools". This package is needed to install Clearance Tool from the repos Then type one of the following commands

devtools::install_github("ScitoVation/ClearanceTool")

to install from Github

Initial Setup

library(devtools) devtools::install_github("bronsonk0619/ClearanceTool2") devtools::install_github("zachcp/chemdoodle") if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("ChemmineR") BiocManager::install("ChemmineOB")

ScitoVation/ClearanceTool documentation built on Dec. 16, 2019, 10:49 p.m.