Man pages for SenguptaLab/MF.matR
Takes mirofluidics data and does stuff with it
| beh_mat | beh_mat melt function Takes a matlab behmat file and converts... |
| beh_mat_tidy | beh_mat_tidy Takes a matlab behmat file and converts it to... |
| beh_merge_all | beh_merge_all function combines functions beh_mat, y_mat, and... |
| beh_merge_all_tidy | beh_merge_all_tidy function combines functions beh_mat,... |
| curve.angle | function to calculate 3 point curvature based on law of... |
| dir_mat | dir_mat melt function Takes a matlab dirmat file and converts... |
| dir_mat_tidy | dir_mat_tidy melt function Takes a matlab-derived dirmat .csv... |
| exp.fit.all.log.lin | exp.fit.all.log.lin |
| fix_reversals | fix_reversals function attempts to fix mis-ID'ed reversals... |
| getAmpVdelF | getAmpVdelF |
| GetSripeProp | using all_track_data file, determines whether a worm is in... |
| Import.WL.data | Import Wormlab data, merge and convert to long format with... |
| lingrad_mirror | lingrad_mirror function takes linear gradient data and... |
| max_delta | max_delta |
| max_negdelta | max_negdelta |
| melt_matData | melt_matData fucntion to tidy up matlab datasets which are in... |
| merge_FIJI_data | merge_FIJI_data |
| norm_beh_enter | norm_beh_enter function Normalizes behavioral data +/- 2.5mm... |
| norm_beh_enter_3 | norm_beh_enter_3 function Normalizes behavioral data +/-... |
| norm_beh_exit | norm_beh_exit function Normalizes behavioral data +/- 2.5mm... |
| norm_beh_exit_3 | norm_beh_exit_3 function Normalizes behavioral data +/- 2.5mm... |
| plotAvgResidency | plotAvgResidency |
| plotGCaMP_multi | plotGCaMP_multi |
| plot_heatmap | plot_heatmap Generate a heatmap from a previously analyzed... |
| plot_Residency | Plot residency from Wormlab dauer data by space and time. |
| plot_Residency_overlay | Plot residency from Wormlab dauer data by space and time,... |
| plotResidency_stripes | plotResidency_stripes |
| plot_speedFood | plot_speedFood plot roaming speed across food conditions |
| plot_stateProbs | Plot state probability from Wormlab data by space and time. |
| Prism_scatter | Prism_scatter |
| pulse_amplitude | pulse_amplitudes |
| read.binsize | read_binsize function simple prompt for binsize - user input |
| register_movie | register_movie |
| spd_mat_tidy | spd_mat_tidy data munge Takes a matlab ymat file and converts... |
| Speed_curve_4xParallel | Speed_curve_4xParallel roam/dwell test using wormlab data |
| WLmult_dauer_res | Wrapper for 'Import.WL.data' and 'plot_Residency' to allow... |
| WriteStripeProp | using all_track_data.csv file, calculates proportion of worm... |
| x_mat_tidy | x_mat_tidy data munge Takes a matlab xmat file and converts... |
| y_mat | y_mat melt function Takes a matlab ymat file and converts it... |
| y_mat_tidy | y_mat_tidy data munge Takes a matlab ymat file and converts... |
