This library was used for eliminating redundant motif based by the relative entropy.
This version was optimized by using Rcpp and was desinged for user friendly.
There's only one function for user to fulfill his/her goal:
main(yourMemeFile, yourTomtomFile [,yourResultFile="result.meme"] [,Numclusters=300] [,cuttreeThreshold="75%"] [,BackgroundAFreq=0.25] [,BackgroundTFreq=0.25] [,BackgroundCFreq=0.25] [,BackgroundGFreq=0.25])
for testing the package, just run:
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