Shamir-Lab/PRODIGY: Personalized prioritization of driver genes
PRODIGY analyzes the expression and SNV profiles of a patient along with data on known pathways and protein-protein interactions. PRODIGY quantifies the impact of each mutated gene on every transcriptionally deregulated pathway using the prize collecting Steiner tree model. Mutated genes are ranked by their aggregated impact on all deregulated pathways.
Getting started
Browse package contents
Package details |
|
|---|---|
| Maintainer | Gal Dinstag <galdinstag@mail.tau.ac.il> |
| License | GPL |
| Version | 1.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
