get_pathway_list_from_graphite: Get list of data.table representing pathways using the...

In Shamir-Lab/PRODIGY: Personalized prioritization of driver genes

Get list of data.table representing pathways using the graphite package. This could take a while so better to use more than a single core

Description

Get list of data.table representing pathways using the graphite package. This could take a while so better to use more than a single core

Usage

get_pathway_list_from_graphite(
  source = "reactome",
  minimal_number_of_nodes = 10,
  num_of_cores = 1
)

Arguments

source	A string representing the graphite source to use. Default is Reactome
minimal_number_of_nodes	An int, lower bound on the number of pathway genes return A list of data.tables, each representing a single network

Shamir-Lab/PRODIGY documentation built on March 27, 2022, 5:29 p.m.