API for Shamir-Lab/PRODIGY
Personalized prioritization of driver genes
| Global functions | |
|---|---|
| PRODIGY | Man page Source code |
| PRODIGY_cohort | Man page Source code |
| analyze_PRODIGY_results | Man page Source code |
| calculate_precision | Source code |
| calculate_recall | Source code |
| check_performances | Man page Source code |
| get_DEGs | Man page Source code |
| get_diff_expressed_genes | Source code |
| get_enriched_pathways | Source code |
| get_enrichment_pvalue | Source code |
| get_network_from_gene_set | Man page Source code |
| get_pathway_genes_from_network | Man page Source code |
| get_pathway_list_from_graphite | Man page Source code |
| get_pathway_network | Source code |
| get_single_graphite_pathway | Source code |
| run_single_PCSF | Source code |
