Files in Shamir-Lab/PRODIGY
Personalized prioritization of driver genes
.Rbuildignore
.gitattributes
.gitignore
DESCRIPTION
NAMESPACE
PRODIGY.Rproj
R/PRODIGY.R
R/PRODIGY_cohort.R
R/analyze_PRODIGY_results.R
R/calculate_precision.R
R/calculate_recall.R
R/check_performances.R
R/example.R
R/get_DEGs.R
R/get_diff_expressed_genes.R
R/get_enriched_pathways.R
R/get_enrichment_pvalue.R
R/get_pathway_network.R
R/run_single_PCSF.R
README.md
Reference_Manual_PRODIGY.md
Supplementary files/Supplementary File 1.xlsx
data/COAD_Expression.RData
data/COAD_SNV.RData
data/STRING_network.RData
data/gold_standard_drivers.RData
data/pathwayDB_nodes.RData
man/PRODIGY.Rd
man/PRODIGY_cohort.Rd
man/analyze_PRODIGY_results.Rd
man/check_performances.Rd
man/get_DEGs.Rd
man/get_network_from_gene_set.Rd
man/get_pathway_genes_from_network.Rd
man/get_pathway_list_from_graphite.Rd
