Meta_expr_matrix: Title
In ShanYiran/TIST: TIST， Transcritpome and histopathological Image integrative analysis for Spatial Transcriptomics
Meta_expr_matrix R Documentation
Title
Description
Title
Usage
Meta_expr_matrix(
exprPath,
Spot_manifest,
savePath,
imagefile,
merge_method = "max",
method = "Walktrap_id"
)
Arguments
exprPath
The address where the RNA-seq file is stored. Such as "/home/data/filtered_feature_bc_matrix/".
Spot_manifest
The TIST results returned by function "Meta_St_img_unsupervised"
savePath
The address where the results stored.
imagefile
The address where the Image file is stored. Such as "/home/data/spatial/tissue_hires_image.png".
merge_method
mean or max for neighbor expression
method
TIST network method is "Walktrap_id"
Value
Mc_manifest
ShanYiran/TIST documentation built on July 22, 2022, 11:48 p.m.
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| Meta_expr_matrix | R Documentation |
Title
Description
Title
Usage
Meta_expr_matrix( exprPath, Spot_manifest, savePath, imagefile, merge_method = "max", method = "Walktrap_id" )
Arguments
exprPath |
The address where the RNA-seq file is stored. Such as "/home/data/filtered_feature_bc_matrix/". |
Spot_manifest |
The TIST results returned by function "Meta_St_img_unsupervised" |
savePath |
The address where the results stored. |
imagefile |
The address where the Image file is stored. Such as "/home/data/spatial/tissue_hires_image.png". |
merge_method |
mean or max for neighbor expression |
method |
TIST network method is "Walktrap_id" |
Value
Mc_manifest
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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