Man pages for ShaoxunLiu/proteinStructureBoost
Generate Boosting Model for Structured Protein
| adaboostModel | Train a adaboost model using feature Matrix |
| adaboostTrain | Train a set of Adaboost models |
| atom.color | Default atom.color |
| atom.value | Default atom.value |
| augVote | Get votes from augmented data |
| caretLime | Perform feature importance analysis using Lime |
| caretTrain | Call train from caret on a trainTest set |
| coord | 3D comparison coordinates for 3D-LBP |
| download.pdb | Download vector of PDB files |
| featureMatrix | Form a feature matrix using lists of positive and negative... |
| form.grid | Form 3D grid for pdb file |
| grid3D | 3D visualization for pdb grid |
| lbp2Feature | Form a row in feature matrix from lbp |
| lbp3d | Form LBP matrix from 3D grid |
| lbpLIME | Get feature importance with LIME |
| plotLIME | Plot LIME feature importance |
| predict | Predict results using adaboostTrain model and featureMatrix |
| rotatePDB | Rotate a pdb structure |
| trainTest | Separate featureMatrix into Train and Test sets |
