Man pages for SharpRT/NFRR_Philippines
NFRRPhilippines
| add_finalNSampleWeek | [Title] |
| calc_sumPlotWeek | Sum infected (I) and total tillers (N=H+I) from each... |
| clean_experimentData | Clean spatially resolved infected tiller count experiment... |
| clean_plotWeekSum | [Title] |
| fitOut_philippinesStandard | Philippines - Standard Residual; Published Fit |
| load_all_experimentData | Load both infected and total tiller count data from the given... |
| load_experimentData | Load infected tiller data from a given experimental site |
| load_sampleDatesFile | Load sampling dates of given site |
| modelOut_philippinesStandard | Philippines - Standard Residual; Published Fit |
| model_resExpJoint2 | Deterministic 1D ODE model of infection of resistant variety... |
| model_susExpJoint2 | Deterministic 1D ODE model of infection of susceptible... |
| name_basePath | Generic filenaming tool |
| name_experimentDataFile | Generic filenaming tool |
| name_institute | Get name of institute |
| opt_conjugateParams | Convert sum of params to a single param ready for... |
| opt_get_compModDatJoint | Get model and data comparisons for residual calculation. |
| opt_get_control | Set and return a fitting routine's control object |
| opt_get_fitFuncParams | Get the optimised parameters from the fitting routine's... |
| opt_is_converged | Determine in the fitting routine successfully converged |
| opt_paramsNLS | Performs non-linear least squares parameter optimisation. |
| opt_residFunc_standard | Calculate standard residuals, d-m |
| opt_residuals | Calculate residuals |
| opt_run_fitFunc | Run chosen fitting routine |
| opt_tryFit | Performs non-linear least squares parameter optimisation,... |
| setup_env | Set up parameters for fitOut and modelOut routines. |
| solve_opt1D | RK45DP7 solver for 1D ODE optimisation routine. |
| update_dead_experimentData | Mark dead hills |
