Shawn-Xu/PGA: An package for identification of novel peptides by customized database derived from RNA-Seq
This package provides functions for construction of customized protein databases based on RNA-Seq data with/without genome guided, database searching, post-processing and report generation. This kind of customized protein database includes both the reference database (such as Refseq or ENSEMBL) and the novel peptide sequences form RNA-Seq data.
Getting started
Browse package contents
Package details |
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| Author | Shaohang Xu, Bo Wen |
| Bioconductor views | ImmunoOncology MassSpectrometry Proteomics RNASeq ReportWriting Sequencing Software |
| Maintainer | Bo Wen <wenbostar@gmail.com>, Shaohang Xu <xsh.skye@gmail.com> |
| License | GPL-2 |
| Version | 1.19.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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