Files in ShixiangWang/CNVMotif
Explore, Analyze and Visualize Catalogs and Patterns of Copy Number Variation in Cancer Genomics
.Rbuildignore
.gitattributes
.github/workflows/pkg-check.yml
.gitignore
CNVMotif.Rproj
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/CNVMotif-package.R
R/RcppExports.R
R/build_sub_matrix.R
R/cluster_pam.R
R/cluster_split.R
R/do_msa.R
R/extract_seqs.R
R/get_score_matrix.R
R/globalVars.R
R/msaMuscleCustom.R
R/seqlogo.R
R/show_seq_logo.R
R/show_seq_shape.R
R/transform_seqs.R
R/utils-pipe.R
R/utils.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/CNVMotif-package.html
docs/reference/build_sub_matrix.html
docs/reference/cluster_pam.html
docs/reference/cluster_pam_estimate.html
docs/reference/extract_seqs.html
docs/reference/figures/README-unnamed-chunk-2-1.png
docs/reference/figures/README-unnamed-chunk-2-2.png
docs/reference/get_score_matrix.html
docs/reference/ggseqlogo2-1.png
docs/reference/ggseqlogo2-2.png
docs/reference/ggseqlogo2.html
docs/reference/index.html
docs/reference/pipe.html
docs/reference/sh_build_sub_matrix.html
docs/reference/sh_cluster_split.html
docs/reference/sh_coding_segs.html
docs/reference/sh_extract_seqs.html
docs/reference/sh_get_score_matrix.html
docs/reference/show_seq_logo-1.png
docs/reference/show_seq_logo-2.png
docs/reference/show_seq_logo.html
docs/reference/show_seq_shape-1.png
docs/reference/show_seq_shape-2.png
docs/reference/show_seq_shape.html
docs/reference/sigminer.helper-package.html
docs/reference/transform_seqs.html
inst/extdata/toy_segTab.RData
inst/test/test.R
man/CNVMotif-package.Rd
man/build_sub_matrix.Rd
man/cluster_pam.Rd
man/cluster_split.Rd
man/do_msa.Rd
man/extract_seqs.Rd
man/figures/README-unnamed-chunk-2-1.png
man/figures/README-unnamed-chunk-2-2.png
man/get_score_matrix.Rd
man/ggseqlogo2.Rd
man/pipe.Rd
man/show_seq_logo.Rd
man/show_seq_shape.Rd
man/transform_seqs.Rd
src/.gitignore
src/LCS.cpp
src/RcppExports.cpp
src/calc_pair_score.cpp
src/getLocalSubstr.cpp
tests/testthat.R
tests/testthat/test-roxytest-testexamples-build_sub_matrix.R
tests/testthat/test-roxytest-testexamples-cluster_pam.R
tests/testthat/test-roxytest-testexamples-do_msa.R
tests/testthat/test-roxytest-testexamples-get_score_matrix.R
tests/testthat/test-roxytest-testexamples-seqlogo.R
tests/testthat/test-roxytest-testexamples-show_seq_logo.R
tests/testthat/test-roxytest-testexamples-show_seq_shape.R
