Man pages for ShixiangWang/CNVMotif
Explore, Analyze and Visualize Catalogs and Patterns of Copy Number Variation in Cancer Genomics
| build_sub_matrix | Build a Substitution Matrix |
| cluster_pam | Estimate Optimal Number of Cluster for PAM Algorithm |
| cluster_split | Split Cluster Sequence into List |
| CNVMotif-package | CNVMotif: Explore, Analyze and Visualize Catalogs and... |
| do_msa | Run Modified Multiple Sequence Alignment |
| extract_seqs | Extract Pasted Sequences from Each Chromosome |
| get_score_matrix | Get Copy Number Sequence Similarity or Distance Matrix |
| ggseqlogo2 | Quick sequence logo plot |
| pipe | Pipe operator |
| show_seq_logo | Show Copy Number Sequence Logos |
| show_seq_shape | Show Copy Number Sequence Shapes |
| transform_seqs | Coding Copy Number Segments with Letters. |
