Man pages for ShixiangWang/UCSCXenaTools
Download and Explore Datasets from UCSC Xena Data Hubs
| availTCGA | Get or Check TCGA Available ProjectID, DataType and FileType |
| cohorts | Get cohorts of XenaHub object |
| datasets | Get datasets of XenaHub object |
| downloadTCGA | Easily Download TCGA Data by Several Options |
| fetch | Fetch Data from UCSC Xena Hosts |
| getTCGAdata | Get TCGA Common Data Sets by Project ID and Property |
| hosts | Get hosts of XenaHub object |
| pipe | Pipe operator |
| samples | Get Samples of a XenaHub object according to 'by' and 'how'... |
| showTCGA | Show TCGA data structure by Project ID or ALL |
| to_snake | Convert camel case to snake case |
| XenaBrowse | View Info of Dataset or Cohort at UCSC Xena Website Using Web... |
| XenaData | Xena Hub Information |
| XenaDataUpdate | Get or Update Newest Data Information of UCSC Xena Data Hubs |
| xena_default_hosts | UCSC Xena Default Hosts |
| XenaDownload | Download Datasets from UCSC Xena Hubs |
| XenaFilter | Filter a XenaHub Object |
| XenaGenerate | Generate and Subset a XenaHub Object from 'XenaData' |
| XenaHub | Generate a XenaHub Object |
| XenaHub-class | Class XenaHub |
| XenaPrepare | Prepare (Load) Downloaded Datasets to R |
| XenaQuery | Query URL of Datasets before Downloading |
| XenaQueryProbeMap | Query ProbeMap URL of Datasets |
| XenaScan | Scan all rows according to user input by a regular expression |
