Files in ShixiangWang/absCopyNumber
Tumor Purity, Ploidy and Absolute Copy Number Estimation
.Rbuildignore
.gitignore
AbsoluteCopyNumber.Rproj
DESCRIPTION
NAMESPACE
NEWS.md
R/absCopyNumber.R
R/helper.R
R/s4class.R
R/step1_initialize.R
R/step2_prepare.R
R/step3_calling.R
README-unnamed-chunk-7-1.png
README.Rmd
README.md
appveyor.yml
inst/CITATION
inst/extdata/SNP6_BLCA_ABSOLUTE_table.txt.gz
inst/extdata/SNP6_blood_normal.seg.txt.gz
inst/extdata/SNP6_blood_normal.segtab.txt.gz
inst/extdata/SNP6_metastatic_tumor.maf.txt.gz
inst/extdata/SNP6_metastatic_tumor.seg.txt.gz
inst/extdata/SNP6_metastatic_tumor.segtab.txt.gz
inst/extdata/SNP6_solid_tumor.maf.txt.gz
inst/extdata/SNP6_solid_tumor.seg.txt.gz
inst/extdata/SNP6_solid_tumor.segtab.txt.gz
inst/extdata/example.cn.txt.gz
inst/extdata/example.snv.txt.gz
inst/test/test.R
man/absCopyNumber-class.Rd
man/abs_calling.Rd
man/abs_initialize.Rd
man/abs_obtain.Rd
man/abs_prepare.Rd
man/abs_subset.Rd
man/abs_supportfiles.Rd
man/get_absCopyNumber.Rd
man/plot_absCopyNumber.Rd
man/run_fromDF.Rd
man/run_fromLocal.Rd
vignettes/absCopyNumber.Rmd
