absCopyNumber-class: Class absCopyNumber

In ShixiangWang/absCopyNumber: Tumor Purity, Ploidy and Absolute Copy Number Estimation

Description

S4 class for storing absCopyNumber input and results

Slots

data

a data.table of Segmentation file containing all filtered segments

SNV

a data.table containing input single nucletide variants.

params

a list containing parameters control data filter and model construction etc.

estimation

table containing estimated results ranked by their fitting errors

TopResult

a list containing result with minimal fitting errors, include 2 data.table: absCN - table containing the absolute copy number estimates of tumor cells based on purity and ploidy pair; absSNV - table containing the absolute multiplicity estimates of SNVs based on purity and ploidy pair.

origin

a data.table contain original segmentation data

ShixiangWang/absCopyNumber documentation built on May 28, 2019, 5:42 p.m.