Man pages for ShixiangWang/absCopyNumber
Tumor Purity, Ploidy and Absolute Copy Number Estimation
| abs_calling | absCopyNumber calling with user specified parameters |
| absCopyNumber-class | Class absCopyNumber |
| abs_initialize | Initialize absCopyNumber object from file or data.frame |
| abs_obtain | Obtain absolute copy number and optinal multiplicity (if SNV... |
| abs_prepare | Prepare parameters for absCopyNumber calling |
| abs_subset | subset a absCopyNumber object by samples |
| abs_supportfiles | Print information about input of absCopyNumber and extra... |
| get_absCopyNumber | Convert copy ratios into abosolute copy numbers when given... |
| plot_absCopyNumber | Plot estimated integer copy numbers for each chromosome. |
| run_fromDF | Run absCopyNumber from data.frame |
| run_fromLocal | Run absCopyNumber from Local Files |
