normalize.ExpressionSet.qd: quantile discretization normalization
In ShixiangWang/arrayConnector: Connect high throughput Array data from different platforms
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Examples
Description
Performs a discretization of continous expression levels to discrete steps.
Usage
1
normalize.ExpressionSet.qd(ExpressionSet = NULL, nbin = 8, ...)
Arguments
ExpressionSet
An ExpressionSet object.
nbin
Numeric vector of length 1; indicates the number of binnings for the discretization.
...
Can be used to pass on parameters to underlying functions.
Details
Please see the references for details.
Value
An ExpressionSet object with adjusted expression matrix.
Author(s)
Andreas Heider
References
Warnat P, Eils R, Brors B: Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes. BMC bioinformatics 2005, 6:265.
See Also
virtualArrayExpressionSets
Examples
1
2
3
4
# library(affydata)
# data(Dilution)
# Dilution <- rma(Dilution)
# normalize.ExpressionSet.qd(Dilution)
ShixiangWang/arrayConnector documentation built on May 14, 2019, 6:02 a.m.
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Description Usage Arguments Details Value Author(s) References See Also Examples
Description
Performs a discretization of continous expression levels to discrete steps.
Usage
1 | normalize.ExpressionSet.qd(ExpressionSet = NULL, nbin = 8, ...)
|
Arguments
ExpressionSet |
An ExpressionSet object. |
nbin |
Numeric vector of length 1; indicates the number of binnings for the discretization. |
... |
Can be used to pass on parameters to underlying functions. |
Details
Please see the references for details.
Value
An ExpressionSet object with adjusted expression matrix.
Author(s)
Andreas Heider
References
Warnat P, Eils R, Brors B: Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes. BMC bioinformatics 2005, 6:265.
See Also
virtualArrayExpressionSets
Examples
1 2 3 4 | # library(affydata)
# data(Dilution)
# Dilution <- rma(Dilution)
# normalize.ExpressionSet.qd(Dilution)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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