findPotentialWiffDirs: Find wiff directories that may contain SS batches

In SiggiSmara/ShinyFIAMSSS: Flow Injection Analysis Mass Spectrometry System Suitability

Description

Find wiff directories that may contain SS batches

Usage

findPotentialWiffDirs(parentPath, resPath, protwizPath,
  doConvert = FALSE, forceRecalc = FALSE)

Arguments

parentPath	a file path that contains wiff data
resPath	a file path that contains the resulting mzML files
protwizPath	a file path to the proteowizard installation
doConvert	boolean. If TRUE then msconvert will be called on batches that are not present in the working directory.
forceRecalc	boolean. If TRUE then all batches will be reconverted with msconvert. This means that any results are also lost.

Details

DONE: find all folders that have at least the spiked sample in them DONE: find all wiff folders that have equal numbers of spikes and blanks DONE: check if a barcode folder is present in resPath corresponding to a wiff folder

Value

a tibble that contains all folders that potentially have full sets of SS batches along with the information if that folder is found in the working directory

SiggiSmara/ShinyFIAMSSS documentation built on May 25, 2019, 7:25 p.m.