R/data_simulation.R

In Siliegia/SIGMA: A clusterability measure for scRNA-seq data

#' SingleCellObject generated from splatter
#'
#' This object contains a simulation od scRNAseq data with 5 clusters of with the following parameters:
#'  nGenes = 1000, batchCells = 500, group.prob = c(0.1, 0.2, 0.3, 0.1, 0.3), path.nonlinearProb = 0, out.prob = 0.1,
#'  dropout.type = "none", lib.loc = 11, de.downProb = 0.5, de.prob = 0.05, seed = 3, de.facLoc = 0.1
#'
#' @format Single Cell Object
#'
#' @source \url{https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1305-0}

"splatO"



#' Measure object created by applying sigma_funct
#'
#' This object contains all elements as described in the output of sigma_funct
#'
#' @format A measure object
#'

"out"