agreg5: Function used to merge overlapping start regions

In Simon-Leonard/APERO: Analysis of Paired-End RNA-seq Output

Function used to merge overlapping start regions

Description

Use detected start regions and mapped read positions to merge overlapping start regions

Usage

agreg5(tot2,ff)

Arguments

tot2	Start regions data.frame with the following column names : 5end (has to be the first column), PU, str and sumfreq. 5end : central position of the start region. PU : positional uncertainty of the region. str : strand of the region sumfreq : number of starting reads in the region
ff	Mapped read coordinates data.frame with the following column names : 5end (has to be the first column), str, sum_freq. 5end : 5' positions of mapped reads str : strain sum_freq : number of mapped reads with the corresponding 5' position and strand

Value

A data.frame containing the merged start regions with the same columns than the tot2 data.frame

Author(s)

Simon Leonard

Simon-Leonard/APERO documentation built on June 17, 2022, 10:31 a.m.