Description Usage Arguments Examples
View source: R/get_variant_data.R
add_daily_count create a daily number of counts from a cumulative count - step 5 /5 in the "create daile counts from cumulative counts" chain
1 | add_daily_count_frum_cumulative(df, date, cumulative, daily, ...)
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... |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 | data <- tribble(
~"date_report", ~"age", ~"sex", ~"cumulatif1", ~"cumulatif2",
"2021-01-01", 18, "M", 10, 1,
"2021-01-02", 18, "M", 9, 2,
"2021-01-04", 18, "M", 12, 4,
"2021-01-01", 19, "M", 10, 1,
"2021-01-02", 19, "M", 9, 2,
"2021-01-04", 19, "M", 12,4,
"2021-01-01", 19, "F", 10,1,
"2021-01-02", 19, "F", 9,2,
"2021-01-04", 19, "F", 12, 4
) %>%
mutate(date_report=as.Date(date_report))
data %>%
fix_cumulative(., date_report, cumulatif1, age, sex) %>% # fix first cumulatif pour assurer qu'oon a pas de baisse de cmulatif
fix_cumulative(., date_report, cumulatif2, age, sex) %>% # fix second cumulatif pour assurer qu'oon a pas de baisse de cmulatif
add_slope(., date_report, cumulatif1, age, sex) %>% # add slope for cumulatif1 for fill in missing dates
add_slope(., date_report, cumulatif2, age, sex) %>% # add slope for cumulatif2 for fill in missing dates
add_missing_dates(., date_report, age, sex) %>%
fill_cumulative_using_slope(., date_report, cumulatif1, age, sex) %>%
fill_cumulative_using_slope(., date_report, cumulatif2, age, sex) %>%
add_daily_count_frum_cumulative(., date_report, cumulatif1, daily1, age,sex) %>%
add_daily_count_frum_cumulative(., date_report, cumulatif2, daily2, age,sex)
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