make.plots: make.plots: plot output from APAM

In SineAndie/APAM: APAM: American plaice assessment model

Description

Plots output from APAM.

Usage

make.plots(mfits)

Arguments

mfits

object from make.fit

Value

a list containing all ggplots

$indexfit1

observed vs predicted survey indices at age for ages 1-7

$indexfit2

observed vs predicted survey indices at age for ages 8-15

$resid_index

survey Z residuals

$pop_process

estimated population processes (recruitment, average fishing mortality rates, spawning stock biomass and population abundance)

$index_bplot

bubble plot of survey index residuals

$crl_fit

observed vs predicted crl fits

$resid_crl

crl Z residuals

$crl_bplot

bubble plot of crl residuals

$landings

estimated model landings with upper/lower bounds

$landratio

estimated landings ratios

$F_at_age

model predicted fishing mortality rates at age

$log_F_dev

model predicted log fishing mortality rate deviations

$process_errors

model predicted process errors

$pe_bplot

bubble plot of model predicted process errors

$catchability

estimated survey cathcability

Examples

## Not run: 
plots<- make.plots(mfits)

## End(Not run)

SineAndie/APAM documentation built on Dec. 18, 2021, 2:05 p.m.